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Graduation draws near for Yui, Ritsu, Mio and Tsumugi, the four 3rd-year students of the Light Music Club. They, together with Azusa, decide to go on a post-graduation trip. Their destination, decided by lot, is London!

The anime will feature the player and rival characters from Nintendo's original Pokémon Red and Pokémon Green (released as Pokémon Blue in North America) video games.

Satou Ichirou once called himself 'Maryuin Koga' and behaved as if he were a hero in a fantasy world. His strange behavior caused his classmates to bully him and he left the school. At his new school, he tries to behave like a normal boy, but one day he meets a girl who cosplays with a blue cape. She calls herself "a researcher traveling from the outer world to search for the 'Dragon Terminal'". At first, Ichirou rejects the girl, Satou Ryouko, because her behavior reminds him of his embarrassing past, but he changes his mind after seeing her getting bullied. In order to bring Ryouko back to real life, Ichirou accepts her and his past and begins the final battle as Maryuin Koga.

Spring marks the start of another new school year at a junior high school in Kamakura. A new transfer student, Ryoichi Kyogoku joins the 8th grade. Kyogoku has a very special proficiency in telepathy and has been ordered by his father to use this ability to scan other people's minds and take over the school. He instantly gains popularity at school from his good looks and charisma and he sets about taking control of the school. As people begin to fall under Kyogoku's spell, he covertly manipulates his followers and pushes aside anyone who gets in his way. With the school almost completely under the control of Kyogoku, only one boy seems unaffected—Seki. Does Seki have what it takes to save everyone from the clutches of mind control?

The movie is not a sequel to the anime, but is an adaptation of all the events in the first novel and contains events that were not in the anime series.